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psme2 proteasome activator subunit 2 [ Poecilia latipinna (sailfin molly) ]

Gene ID: 106965302, updated on 13-Mar-2024

Summary

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Gene symbol
psme2
Gene description
proteasome activator subunit 2
See related
Ensembl:ENSPLAG00000009630
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia latipinna
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
human zebrafish all
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Genomic context

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See psme2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current P_latipinna-1.0 (GCF_001443285.1) Unplaced Scaffold NW_015114414.1 (58871..64673, complement)

NW_015114414.1Genomic Context describing neighboring genes Neighboring gene AVL9 homolog (S. cerevisiase) Neighboring gene LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated Neighboring gene ring finger protein 31 Neighboring gene uncharacterized protein K02A2.6-like Neighboring gene interferon regulatory factor 9

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015114414.1 Unplaced Scaffold Reference P_latipinna-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables endopeptidase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of G1/S transition of mitotic cell cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of proteasomal protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of proteasome activator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
proteasome activator complex subunit 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia latipinna Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P_latipinna-1.0

Genomic

  1. NW_015114414.1 Reference P_latipinna-1.0

    Range
    58871..64673 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015061309.1 → XP_014916795.1  proteasome activator complex subunit 2

    UniProtKB/TrEMBL
    A0A3B3U3S6
    Related
    ENSPLAP00000007294.1, ENSPLAT00000004802.1
    Conserved Domains (2) summary
    pfam02251
    Location:14 → 70
    PA28_alpha; Proteasome activator pa28 alpha subunit
    pfam02252
    Location:102 → 243
    PA28_beta; Proteasome activator pa28 beta subunit
Nucleotide Protein
Heading Accession and Version

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