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AI837181 expressed sequence AI837181 [ Mus musculus (house mouse) ]

Gene ID: 107242, updated on 2-Nov-2024

Summary

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Official Symbol
AI837181provided by MGI
Official Full Name
expressed sequence AI837181provided by MGI
Primary source
MGI:MGI:2147598
See related
Ensembl:ENSMUSG00000047423 AllianceGenome:MGI:2147598
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Bles03
Summary
Is expressed in several structures, including brain; cardiovascular system; genitourinary system; gut; and integumental system. Orthologous to human C11orf68 (chromosome 11 open reading frame 68). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in adrenal adult (RPKM 47.5), ovary adult (RPKM 47.3) and 28 other tissues See more
Orthologs
human all
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Genomic context

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See AI837181 in Genome Data Viewer
Location:
19 A; 19 4.32 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (5475172..5477345)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (5425144..5427317)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930481A15 gene Neighboring gene predicted pseudogene 6293 Neighboring gene STARR-positive B cell enhancer ABC_E8929 Neighboring gene DR1 associated protein 1 Neighboring gene predicted gene, 25432 Neighboring gene predicted gene, 31070

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The structure at 2.5 A resolution of human basophilic leukemia-expressed protein BLES03. Bitto E, et al. Acta Crystallogr Sect F Struct Biol Cryst Commun, 2005 Sep 1. PMID 16511166, Free PMC Article
  2. Systematic analysis of human protein complexes identifies chromosome segregation proteins. Hutchins JR, et al. Science, 2010 Apr 30. PMID 20360068, Free PMC Article
  3. The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. Koscielny G, et al. Nucleic Acids Res, 2014 Jan. PMID 24194600, Free PMC Article
  4. BraInMap Elucidates the Macromolecular Connectivity Landscape of Mammalian Brain. Pourhaghighi R, et al. Cell Syst, 2020 Apr 22. PMID 32325033, Free PMC Article
  5. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article

See all (19) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Structural characterization of the human ortholog.
    Title: The structure at 2.5 A resolution of human basophilic leukemia-expressed protein BLES03.
Submit: New GeneRIF Correction

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 
  • Targeted (2) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
UPF0696 protein C11orf68 homolog
Names
basophilic leukemia expressed protein
basophilic leukemia-expressed protein Bles03
protein WF-3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001256515.1 → NP_001243444.1  UPF0696 protein C11orf68 homolog isoform b

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site that causes a frameshift in the central and 3' coding regions, compared to variant 1. The encoded isoform (b) has a distinct and shorter C-terminus, compared to isoform a.
    Source sequence(s)
    AC122861, BC017542, BE993470, CK622392
    Consensus CDS
    CCDS89308.1
    UniProtKB/Swiss-Prot
    Q8VD62
    Related
    ENSMUSP00000158508.2, ENSMUST00000054477.8

  2. NM_134149.2 → NP_598910.2  UPF0696 protein C11orf68 homolog isoform a

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the shorter transcript but encodes the longer isoform (a).
    Source sequence(s)
    AV579065, BC017542, CJ181010
    Consensus CDS
    CCDS29463.2
    UniProtKB/Swiss-Prot
    E9QNR6, Q6LCE3, Q8VD62
    Related
    ENSMUSP00000125651.2, ENSMUST00000159759.3
    Conserved Domains (1) summary
    pfam08939
    Location:162 → 259
    DUF1917; Domain of unknown function (DUF1917)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    5475172..5477345
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8VD62.2 GenPept UniProtKB/Swiss-Prot:Q8VD62

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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