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IARS1 isoleucyl-tRNA synthetase 1 [ Coturnix japonica (Japanese quail) ]

Gene ID: 107319656, updated on 14-Mar-2024

Summary

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Gene symbol
IARS1
Gene description
isoleucyl-tRNA synthetase 1
See related
Ensembl:ENSCJPG00005012250
Gene type
protein coding
RefSeq status
MODEL
Organism
Coturnix japonica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Perdicinae; Coturnix
Also known as
IARS
Orthologs
human mouse all
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Genomic context

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See IARS1 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
35
Annotation release Status Assembly Chr Location
101 current Coturnix japonica 2.1 (GCF_001577835.2) 12 NC_029527.1 (2225857..2294514)

Chromosome 12 - NC_029527.1Genomic Context describing neighboring genes Neighboring gene centromere protein P Neighboring gene small nucleolar RNA SNORA84 Neighboring gene osteoglycin Neighboring gene nucleolar protein 8 Neighboring gene ATPase plasma membrane Ca2+ transporting 2 Neighboring gene solute carrier family 6 member 11

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029527.1 Chromosome 12 Reference Coturnix japonica 2.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables aminoacyl-tRNA editing activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables isoleucine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in isoleucyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
isoleucine--tRNA ligase, cytoplasmic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Coturnix japonica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coturnix japonica 2.1 Primary Assembly

Genomic

  1. NC_029527.1 Reference Coturnix japonica 2.1 Primary Assembly

    Range
    2225857..2294514
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015874662.2 → XP_015730148.1  isoleucine--tRNA ligase, cytoplasmic

    UniProtKB/TrEMBL
    A0A8C2TK12, A0A8C2YBR6
    Conserved Domains (3) summary
    cd07961
    Location:640 → 834
    Anticodon_Ia_Ile_ABEc; Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases
    cd00818
    Location:376 → 640
    IleRS_core; catalytic core domain of isoleucyl-tRNA synthetases
    PLN02882
    Location:6 → 1072
    PLN02882; aminoacyl-tRNA ligase

  2. XM_015874661.2 → XP_015730147.1  isoleucine--tRNA ligase, cytoplasmic

    UniProtKB/TrEMBL
    A0A8C2TK12, A0A8C2YBR6
    Related
    ENSCJPP00005014726.1, ENSCJPT00005020910.1
    Conserved Domains (3) summary
    cd07961
    Location:640 → 834
    Anticodon_Ia_Ile_ABEc; Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases
    cd00818
    Location:376 → 640
    IleRS_core; catalytic core domain of isoleucyl-tRNA synthetases
    PLN02882
    Location:6 → 1072
    PLN02882; aminoacyl-tRNA ligase
Nucleotide Protein
Heading Accession and Version

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