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ASPN asporin [ Coturnix japonica (Japanese quail) ]

Gene ID: 107319662, updated on 14-Mar-2024

Summary

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Gene symbol
ASPN
Gene description
asporin
See related
Ensembl:ENSCJPG00005012245
Gene type
protein coding
RefSeq status
MODEL
Organism
Coturnix japonica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Perdicinae; Coturnix
Orthologs
human mouse all
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Genomic context

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See ASPN in Genome Data Viewer
Location:
chromosome: 12
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Coturnix japonica 2.1 (GCF_001577835.2) 12 NC_029527.1 (2139480..2154406)

Chromosome 12 - NC_029527.1Genomic Context describing neighboring genes Neighboring gene inositol-pentakisphosphate 2-kinase Neighboring gene centromere protein P Neighboring gene extracellular matrix protein 2 Neighboring gene osteomodulin Neighboring gene osteoglycin

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029527.1 Chromosome 12 Reference Coturnix japonica 2.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
asporin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Coturnix japonica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coturnix japonica 2.1 Primary Assembly

Genomic

  1. NC_029527.1 Reference Coturnix japonica 2.1 Primary Assembly

    Range
    2139480..2154406
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015874673.2 → XP_015730159.1  asporin

    UniProtKB/TrEMBL
    A0A8C2TMN4
    Conserved Domains (4) summary
    smart00013
    Location:66 → 95
    LRRNT; Leucine rich repeat N-terminal domain
    cd00116
    Location:118 → 294
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:74 → 94
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:119 → 198
    LRR_8; Leucine rich repeat

  2. XM_015874672.2 → XP_015730158.1  asporin

    UniProtKB/TrEMBL
    A0A8C2TMN4
    Related
    ENSCJPP00005014700.1, ENSCJPT00005020880.1
    Conserved Domains (4) summary
    smart00013
    Location:66 → 95
    LRRNT; Leucine rich repeat N-terminal domain
    cd00116
    Location:118 → 294
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:74 → 94
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:119 → 198
    LRR_8; Leucine rich repeat
Nucleotide Protein
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