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LOC107984016 uncharacterized LOC107984016 [ Homo sapiens (human) ]

Gene ID: 107984016, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107984016
Gene description
uncharacterized LOC107984016
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107984016 in Genome Data Viewer
Location:
14q24.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (68605400..68610552, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (62813282..62816908, complement)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene RAD51 paralog B Neighboring gene uncharacterized LOC124903334 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:68993143-68993664 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:68993665-68994185 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:69006151-69006711 Neighboring gene RAD51B intron CAGE-defined mid-level expression enhancer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:69017510-69018030 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:69018031-69018551 Neighboring gene uncharacterized LOC124903335 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:69035996-69036508 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_36356 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:69052085-69052586 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_36364 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:69073752-69074398 Neighboring gene Sharpr-MPRA regulatory region 11310 Neighboring gene ReSE screen-validated silencer GRCh37_chr14:69086033-69086224 Neighboring gene uncharacterized LOC100996664 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5868 Neighboring gene uncharacterized LOC124903333 Neighboring gene ReSE screen-validated silencer GRCh37_chr14:69124801-69124929 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8611 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:69136154-69136654 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:69136655-69137155 Neighboring gene Sharpr-MPRA regulatory region 15027 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:69143042-69143542 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:69143543-69144043 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:69149771-69150316 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:69150317-69150861

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    68605400..68610552 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_943973.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    62813282..62816908 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007084864.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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