U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC107984179 uncharacterized LOC107984179 [ Homo sapiens (human) ]

Gene ID: 107984179, updated on 17-Sep-2024

Summary

Go to the top of the page Help
Gene symbol
LOC107984179
Gene description
uncharacterized LOC107984179
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC107984179 in Genome Data Viewer
Location:
10q11.21
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (44389766..44401848)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (45270622..45282704)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124902544 Neighboring gene NANOG hESC enhancer GRCh37_chr10:44793368-44793869 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr10:44796158-44797357 Neighboring gene long intergenic non-protein coding RNA 2881 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3312 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:44805333-44805502 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:44806263-44806765 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3313 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2339 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:44821405-44821620 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:44833715-44834216 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:44852471-44853402 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:44859545-44860046 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:44860047-44860546 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr10:44866272-44866820 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:44873825-44874771 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:44878101-44878794 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:44878795-44879488 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:44879489-44880180 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2340 Neighboring gene C-X-C motif chemokine ligand 12 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:44890534-44891279 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:44891280-44892024 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:44894259-44895003 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:44895004-44895748 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:44895749-44896492 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:44921360-44921534 Neighboring gene ribosomal protein L9 pseudogene 21 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr10:44972894-44974093 Neighboring gene uncharacterized LOC124902533

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    44389766..44401848
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001747298.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    45270622..45282704
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007081365.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases