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LOC107984270 uncharacterized LOC107984270 [ Homo sapiens (human) ]

Gene ID: 107984270, updated on 10-Oct-2023

Summary

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Gene symbol
LOC107984270
Gene description
uncharacterized LOC107984270
See related
Ensembl:ENSG00000286289
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in lung (RPKM 2.4), endometrium (RPKM 0.8) and 13 other tissues See more
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Genomic context

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Location:
10q25.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (113482493..113492329, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (114373315..114383937, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378490 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr10:115112200-115113399 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:115118149-115118913 Neighboring gene RNA, U7 small nuclear 165 pseudogene Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr10:115141212-115142411 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2837 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:115161035-115161535 Neighboring gene Sharpr-MPRA regulatory region 9752 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:115213798-115214298 Neighboring gene Sharpr-MPRA regulatory region 1511 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr10:115251436-115252635 Neighboring gene peptidylprolyl isomerase A pseudogene 39 Neighboring gene uncharacterized LOC124902504 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr10:115317286-115317966 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:115317967-115318647 Neighboring gene Sharpr-MPRA regulatory region 9721 Neighboring gene MPRA-validated peak1095 silencer Neighboring gene hyaluronan binding protein 2 Neighboring gene nebulin related anchoring protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    113482493..113492329 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001747591.2 RNA Sequence

    Related
    ENST00000658845.1

  2. XR_001747592.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    114373315..114383937 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007080867.1 RNA Sequence

  2. XR_007080868.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases