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PRPF19-DT PRPF19 divergent transcript [ Homo sapiens (human) ]

Gene ID: 107984333, updated on 17-Sep-2024

Summary

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Official Symbol
PRPF19-DTprovided by HGNC
Official Full Name
PRPF19 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55484
See related
AllianceGenome:HGNC:55484
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 1.1), liver (RPKM 0.2) and 21 other tissues See more
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Genomic context

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See PRPF19-DT in Genome Data Viewer
Location:
11q12.2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (60906779..60910900)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (60857924..60862052)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (60674251..60678372)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene zona pellucida glycoprotein 1 Neighboring gene pre-mRNA processing factor 19 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:60666609-60667134 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:60673689-60674276 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4781 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4782 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4783 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:60679869-60680867 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:60681866-60682864 Neighboring gene TMEM109 divergent transcript Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4785 Neighboring gene uncharacterized LOC124902676 Neighboring gene transmembrane protein 109 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr11:60686309-60687508

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_186696.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP003721

  2. NR_186697.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP003721

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    60906779..60910900
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    60857924..60862052
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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