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LOC107984709 uncharacterized LOC107984709 [ Homo sapiens (human) ]

Gene ID: 107984709, updated on 22-Oct-2024

Summary

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Gene symbol
LOC107984709
Gene description
uncharacterized LOC107984709
See related
Ensembl:ENSG00000289583
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107984709 in Genome Data Viewer
Location:
14q24.1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (68773316..68780197, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (62980382..62987341, complement)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:69171588-69172111 Neighboring gene ribosomal protein L12 pseudogene 7 Neighboring gene uncharacterized LOC105370547 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:69197453-69198006 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:69203012-69203538 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:69203539-69204063 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8613 Neighboring gene RNA, U6 small nuclear 921, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:69229160-69229660 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:69229661-69230161 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_36402 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:69247495-69247996 Neighboring gene HNF1 motif-containing MPRA enhancer 48 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8614 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5869 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5870 Neighboring gene Sharpr-MPRA regulatory region 7662 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8615 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8616 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8617 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:69256702-69257317 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5871 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5872 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:69261405-69261949 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5873 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8619 Neighboring gene ZFP36 ring finger protein like 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8620 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8621 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8622 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8623 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:69283011-69283750 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8625 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8626 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8627 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8628 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8629 Neighboring gene Sharpr-MPRA regulatory region 4438 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:69310317-69310829 Neighboring gene mago homolog 3, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    68773316..68780197 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001750793.2 RNA Sequence

    Related
    ENST00000691194.2

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    62980382..62987341 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007084868.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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