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LOC107984886 uncharacterized LOC107984886 [ Homo sapiens (human) ]

Gene ID: 107984886, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107984886
Gene description
uncharacterized LOC107984886
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107984886 in Genome Data Viewer
Location:
16q12.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (51310739..51319058)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (57108614..57116933)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:51184378-51184878 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr16:51188534-51189523 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:51189524-51190512 Neighboring gene spalt like transcription factor 1 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr16:51214879-51215686 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:51215687-51216494 Neighboring gene VISTA enhancer hs76 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr16:51324751-51325261 Neighboring gene uracil-DNA glycosylase pseudogene 1 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:51392697-51393498 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_43383 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_43384 Neighboring gene uncharacterized LOC105371256 Neighboring gene uncharacterized LOC102723323 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr16:51426797-51427996 Neighboring gene VISTA enhancer hs848

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    51310739..51319058
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001752173.1 RNA Sequence

  2. XR_001752175.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    57108614..57116933
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007086477.1 RNA Sequence

  2. XR_007086476.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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