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LOC107985075 uncharacterized LOC107985075 [ Homo sapiens (human) ]

Gene ID: 107985075, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107985075
Gene description
uncharacterized LOC107985075
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in skin (RPKM 9.0), esophagus (RPKM 1.5) and 3 other tissues See more
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Genomic context

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See LOC107985075 in Genome Data Viewer
Location:
17p13.1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (8079448..8083286)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene arachidonate 15-lipoxygenase type B Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr17:7960995-7961512 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:7967665-7968166 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:7972295-7972796 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:7976377-7976910 Neighboring gene arachidonate lipoxygenase 3 pseudogene 1 Neighboring gene arachidonate 12-lipoxygenase, 12R type Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8149 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11660 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:7990062-7990810 Neighboring gene microRNA 4314 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8150 Neighboring gene arachidonate epidermal lipoxygenase 3 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8151 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr17:8020998-8022197

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000017.11 Chromosome 17 Reference GRCh38.p14 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    8079448..8083286
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001752778.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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