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WDR7-OT1 WDR7 overlapping transcript 1 [ Homo sapiens (human) ]

Gene ID: 107985140, updated on 10-Oct-2023

Summary

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Official Symbol
WDR7-OT1provided by HGNC
Official Full Name
WDR7 overlapping transcript 1provided by HGNC
Primary source
HGNC:HGNC:45131
See related
AllianceGenome:HGNC:45131
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
WDR7-UA1; WDR7-UT1
Expression
Biased expression in testis (RPKM 1.0) and prostate (RPKM 0.1) See more
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Genomic context

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Location:
18q21.31
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (57039979..57049295)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (57241584..57254345)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:54304875-54305860 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:54305861-54306845 Neighboring gene Sharpr-MPRA regulatory region 10710 Neighboring gene thioredoxin like 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13364 Neighboring gene WD repeat domain 7 Neighboring gene NANOG hESC enhancer GRCh37_chr18:54503488-54503989 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr18:54540953-54541541 Neighboring gene uncharacterized LOC124904382 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr18:54653903-54654752 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13365 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:54679651-54680151 Neighboring gene uncharacterized LOC105372136 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13366 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:54728921-54729810 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr18:54731909-54732444 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr18:54738769-54739482 Neighboring gene long intergenic non-protein coding RNA, regulator of reprogramming

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

General gene information

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Other Names

  • WDR7 3'UTR-associated RNA 1
  • WDR7 overlapping transcript 1 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    57039979..57049295
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001753461.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    57241584..57254345
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007088203.1 RNA Sequence

  2. XR_007088207.1 RNA Sequence

  3. XR_007088202.1 RNA Sequence

  4. XR_007088204.1 RNA Sequence

  5. XR_007088205.1 RNA Sequence

  6. XR_007088206.1 RNA Sequence

Nucleotide Protein
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