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LINC02803 long intergenic non-protein coding RNA 2803 [ Homo sapiens (human) ]

Gene ID: 107985228, updated on 22-Oct-2024

Summary

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Official Symbol
LINC02803provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2803provided by HGNC
Primary source
HGNC:HGNC:54328
See related
Ensembl:ENSG00000227740 AllianceGenome:HGNC:54328
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02803 in Genome Data Viewer
Location:
1q25.1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (175893796..175921165, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (175249124..175276487, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371623 Neighboring gene Sharpr-MPRA regulatory region 1508 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2135 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2136 Neighboring gene NANOG hESC enhancer GRCh37_chr1:175369460-175369988 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2137 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1568 Neighboring gene tenascin R Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:175532897-175533398 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:175533399-175533898 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2138 Neighboring gene MPRA-validated peak472 silencer Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr1:175777677-175778299 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:175801421-175801962 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:175801963-175802504 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:175803681-175804238 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:175829545-175830046 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:175830047-175830546 Neighboring gene uncharacterized LOC124904458 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2139 Neighboring gene long intergenic non-protein coding RNA 1657 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:175885507-175885694 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:175892848-175893023 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:175903651-175904515 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr1:175905380-175906244 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:175906245-175907107 Neighboring gene ribosomal protein S29 pseudogene 5 Neighboring gene microRNA 1843 Neighboring gene small Cajal body-specific RNA 3 Neighboring gene COP1 E3 ubiquitin ligase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    175893796..175921165 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001738304.2 RNA Sequence

  2. XR_007066741.1 RNA Sequence

    Related
    ENST00000426575.3

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    175249124..175276487 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007070869.1 RNA Sequence

  2. XR_007070868.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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