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LOC107985251 uncharacterized LOC107985251 [ Homo sapiens (human) ]

Gene ID: 107985251, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107985251
Gene description
uncharacterized LOC107985251
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107985251 in Genome Data Viewer
Location:
1q32.2
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (207127010..207322129, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (206392262..206587273, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:207224117-207224687 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:207225911-207226550 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:207240869-207241100 Neighboring gene 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2439 Neighboring gene YOD1 deubiquitinase Neighboring gene complement component 4 binding protein beta Neighboring gene complement component 4 binding protein alpha Neighboring gene Sharpr-MPRA regulatory region 9788 Neighboring gene C4BPA pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:207369102-207369602 Neighboring gene C4BPA pseudogene 3 Neighboring gene C4BPA pseudogene 2 Neighboring gene long intergenic non-protein coding RNA 2942 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:207489929-207490758 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2440 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1770 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2441 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2442 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2443 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2444 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2445 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:207519691-207520191 Neighboring gene CD55 molecule (Cromer blood group) Neighboring gene uncharacterized LOC124904498 Neighboring gene uncharacterized LOC105372880 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2446

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    207127010..207322129 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007066838.1 RNA Sequence

  2. XR_007066837.1 RNA Sequence

  3. XR_007066840.1 RNA Sequence

  4. XR_007066843.1 RNA Sequence

  5. XR_007066839.1 RNA Sequence

  6. XR_007066841.1 RNA Sequence

  7. XR_001738422.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    206392262..206587273 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007071024.1 RNA Sequence

  2. XR_007071023.1 RNA Sequence

  3. XR_007071026.1 RNA Sequence

  4. XR_007071029.1 RNA Sequence

  5. XR_007071025.1 RNA Sequence

  6. XR_007071028.1 RNA Sequence

  7. XR_007071027.1 RNA Sequence

Nucleotide Protein
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