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LINC02602 long intergenic non-protein coding RNA 2602 [ Homo sapiens (human) ]

Gene ID: 107985257, updated on 22-Oct-2024

Summary

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Official Symbol
LINC02602provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2602provided by HGNC
Primary source
HGNC:HGNC:53968
See related
Ensembl:ENSG00000298298 AllianceGenome:HGNC:53968
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02602 in Genome Data Viewer
Location:
1q32.2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (210290338..210293149, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (209529025..209531836, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (210463683..210466494, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene SERTAD4 antisense RNA 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:210406019-210406552 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:210411491-210412001 Neighboring gene SERTA domain containing 4 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:210424713-210425268 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:210425824-210426378 Neighboring gene Sharpr-MPRA regulatory region 1241 Neighboring gene ST13, Hsp70 interacting protein pseudogene 19 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:210473593-210474427 Neighboring gene ribonuclease H1 pseudogene 3 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr1:210484426-210485625 Neighboring gene uncharacterized LOC124904502

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. A novel long non-coding RNATCONS_00001798 is downregulated and predicts survival in patients with non-small cell lung cancer. Gao L, et al. Oncol Lett, 2018 Apr. PMID 29564001, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

General gene information

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Other Names

  • TCONS_00001798

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183451.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL035414
    Related
    ENST00000754546.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    210290338..210293149 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_011332687.1 Reference GRCh38.p14 PATCHES

    Range
    70080..72891 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    209529025..209531836 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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