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LOC107985402 uncharacterized LOC107985402 [ Homo sapiens (human) ]

Gene ID: 107985402, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107985402
Gene description
uncharacterized LOC107985402
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107985402 in Genome Data Viewer
Location:
20p11.21
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (24818796..24823611, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (24881850..24886721, complement)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:24425863-24426594 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:24432920-24433420 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:24441797-24442704 Neighboring gene glyceraldehyde 3 phosphate dehydrogenase pseudogene 53 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:24460095-24460596 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:24470679-24471340 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:24471341-24472000 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:24472001-24472660 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:24484347-24484848 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:24484849-24485348 Neighboring gene synapse differentiation inducing 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:24492633-24493134 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:24493135-24493634 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:24565613-24566113 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:24570298-24570888 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:24570889-24571480 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:24590903-24591802 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:24596611-24597428 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:24614353-24615005 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr20:24615089-24616288 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:24619223-24619724 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:24619725-24620224 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:24715421-24716327 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:24717937-24718763 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17644 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17645 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:24723033-24723933 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:24727663-24728164 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:24728165-24728664 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:24743840-24744340 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17646 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:24770113-24770614 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:24789476-24789976 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:24796263-24796764 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:24796765-24797264 Neighboring gene ReSE screen-validated silencer GRCh37_chr20:24806238-24806412 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17647 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:24849215-24849714 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17648 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17649 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17650 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:24855486-24855986 Neighboring gene uncharacterized LOC124904881 Neighboring gene ReSE screen-validated silencer GRCh37_chr20:24881363-24881542 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17651 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12737 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:24899137-24899770 Neighboring gene long intergenic non-protein coding RNA 2967

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    24818796..24823611 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001754562.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    24881850..24886721 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007089823.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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