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LOC107985438 uncharacterized LOC107985438 [ Homo sapiens (human) ]

Gene ID: 107985438, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107985438
Gene description
uncharacterized LOC107985438
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 13.2) See more
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Genomic context

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See LOC107985438 in Genome Data Viewer
Location:
20p11.21
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (23994108..23996557)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:23965513-23966509 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:23974385-23975104 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:23975825-23976543 Neighboring gene POM121 transmembrane nucleoporin like 3, pseudogene Neighboring gene gamma-glutamyltransferase light chain 1 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr20:23999092-24000291 Neighboring gene Sharpr-MPRA regulatory region 10846 Neighboring gene ReSE screen-validated silencer GRCh37_chr20:24072588-24072791 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr20:24083185-24084384 Neighboring gene wound and keratinocyte migration associated lncRNA 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:24093443-24093943 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:24098080-24098789 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr20:24098790-24099500 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:24124334-24124834 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12736 Neighboring gene Sharpr-MPRA regulatory region 14939 Neighboring gene long intergenic non-protein coding RNA 1721 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr20:24192565-24193107

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000020.11 Chromosome 20 Reference GRCh38.p14 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    23994108..23996557
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001754556.3 RNA Sequence

  2. XR_001754555.3 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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