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LOC107985458 uncharacterized LOC107985458 [ Homo sapiens (human) ]

Gene ID: 107985458, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107985458
Gene description
uncharacterized LOC107985458
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107985458 in Genome Data Viewer
Location:
1q31.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (195481484..195514430)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (194827594..194860525)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107985242 Neighboring gene uncharacterized LOC105371670 Neighboring gene MPRA-validated peak613 silencer Neighboring gene MPRA-validated peak614 silencer Neighboring gene MPRA-validated peak616 silencer Neighboring gene MPRA-validated peak617 silencer Neighboring gene RNA, U6 small nuclear 983, pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:194827800-194828304 Neighboring gene MPRA-validated peak621 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:195065497-195066109 Neighboring gene MPRA-validated peak624 silencer Neighboring gene MPRA-validated peak625 silencer Neighboring gene MPRA-validated peak626 silencer Neighboring gene NANOG hESC enhancer GRCh37_chr1:195305658-195306186 Neighboring gene MPRA-validated peak630 silencer Neighboring gene MPRA-validated peak631 silencer Neighboring gene uncharacterized LOC105371671 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1658 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:195689645-195690174 Neighboring gene Sharpr-MPRA regulatory region 1679 Neighboring gene uncharacterized LOC105371672

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    195481484..195514430
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001737815.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    194827594..194860525
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007069706.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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