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LINC02943 long intergenic non-protein coding RNA 2943 [ Homo sapiens (human) ]

Gene ID: 107985484, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02943provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2943provided by HGNC
Primary source
HGNC:HGNC:55958
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02943 in Genome Data Viewer
Location:
21q22.2
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (39028524..39084533, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (37413198..37469178, complement)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1700 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18464 Neighboring gene VISTA enhancer hs1516 Neighboring gene long intergenic non-protein coding RNA 2940 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18465 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:40393817-40394317 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:40395325-40395890 Neighboring gene Sharpr-MPRA regulatory region 7751 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:40434218-40434800 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:40447061-40447847 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13318 Neighboring gene ribosomal protein L23a pseudogene 12 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:40509167-40510074 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr21:40529419-40530214 Neighboring gene PCBP2 pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

    Range
    39028524..39084533 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001755055.2 RNA Sequence

  2. XR_001755054.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060945.1 Alternate T2T-CHM13v2.0

    Range
    37413198..37469178 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007090181.1 RNA Sequence

  2. XR_007090180.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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