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LOC107985584 uncharacterized LOC107985584 [ Homo sapiens (human) ]

Gene ID: 107985584, updated on 10-Oct-2023

Summary

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Gene symbol
LOC107985584
Gene description
uncharacterized LOC107985584
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 13.1), brain (RPKM 1.1) and 4 other tissues See more
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Genomic context

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See LOC107985584 in Genome Data Viewer
Location:
22q11.21
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (20695536..20696929)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (21104368..21105638)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene ABHD17A pseudogene 4 Neighboring gene ReSE screen-validated silencer GRCh37_chr22:21041230-21041450 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:21051020-21051636 Neighboring gene POM121 transmembrane nucleoporin like 4, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13497 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18683 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:21057515-21058087 Neighboring gene transmembrane protein 191A (pseudogene) Neighboring gene BCR pseudogene 5 Neighboring gene phosphatidylinositol 4-kinase alpha Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:21089235-21089736 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13499 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18684 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18685 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18686 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18687 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:21105755-21106552 Neighboring gene Sharpr-MPRA regulatory region 10582 Neighboring gene serpin family D member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    20695536..20696929
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007068010.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    21104368..21105638
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007090461.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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