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LOC107985653 uncharacterized LOC107985653 [ Homo sapiens (human) ]

Gene ID: 107985653, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107985653
Gene description
uncharacterized LOC107985653
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107985653 in Genome Data Viewer
Location:
Xq21.31
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (88984714..88989974)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (87413603..87418863)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107985713 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chrX:87990232-87991431 Neighboring gene H3K27ac hESC enhancer GRCh37_chrX:87994167-87994667 Neighboring gene CPX chromosome region candidate 1 Neighboring gene NANOG hESC enhancer GRCh37_chrX:88083247-88083748 Neighboring gene Sharpr-MPRA regulatory region 3371 Neighboring gene ReSE screen-validated silencer GRCh37_chrX:88193497-88193682 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chrX:88238077-88238665 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:88418438-88419005 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:88419006-88419572 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:88547967-88548466 Neighboring gene uncharacterized LOC102724150 Neighboring gene ReSE screen-validated silencer GRCh37_chrX:88660958-88661203 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrX:88687522-88688285 Neighboring gene sorcin pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    88984714..88989974
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001755987.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    87413603..87418863
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007090891.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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