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LOC107985669 uncharacterized LOC107985669 [ Homo sapiens (human) ]

Gene ID: 107985669, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107985669
Gene description
uncharacterized LOC107985669
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107985669 in Genome Data Viewer
Location:
Xq21.1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (78203563..78221173)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (76638618..76656229)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29785 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chrX:77413269-77414468 Neighboring gene TATA-box binding protein associated factor 9b Neighboring gene fibronectin type III domain containing 3C, pseudogene Neighboring gene MPRA-validated peak7397 silencer Neighboring gene cysteinyl leukotriene receptor 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29786 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29787 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrX:77769873-77770852 Neighboring gene high mobility group nucleosome binding domain 1 pseudogene 34

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    78203563..78221173
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001755899.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    76638618..76656229
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007091244.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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