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LOC107985710 uncharacterized LOC107985710 [ Homo sapiens (human) ]

Gene ID: 107985710, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107985710
Gene description
uncharacterized LOC107985710
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107985710 in Genome Data Viewer
Location:
Xq21.33
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (94851182..94923005)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (93296383..93368835)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107985647 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrX:93950762-93951495 Neighboring gene H3K27ac hESC enhancer GRCh37_chrX:93952205-93952718 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrX:93953560-93954556 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:93958541-93959535 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrX:93959536-93960531 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chrX:93960532-93961526 Neighboring gene cyclin B1 interacting protein 1 pseudogene 3 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:94100291-94100831 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:94117653-94118233 Neighboring gene H3K27ac hESC enhancer GRCh37_chrX:94142296-94142796 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:94162743-94163280 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:94163281-94163816 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrX:94347448-94348142 Neighboring gene microRNA 548m Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chrX:94544817-94546016 Neighboring gene uncharacterized LOC124905288

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    94851182..94923005
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001755916.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    93296383..93368835
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007091108.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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