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LOC107985725 uncharacterized LOC107985725 [ Homo sapiens (human) ]

Gene ID: 107985725, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107985725
Gene description
uncharacterized LOC107985725
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107985725 in Genome Data Viewer
Location:
1q44
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (245022253..245032619)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene RNA, U6 small nuclear 947, pseudogene Neighboring gene uncharacterized LOC124900416 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:245131334-245131838 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2024 Neighboring gene EFCAB2 antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2025 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2026 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2027 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2849 Neighboring gene EF-hand calcium binding domain 2 Neighboring gene RNA, U6 small nuclear 1089, pseudogene Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr1:245209832-245210332 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr1:245210333-245210833 Neighboring gene RNA, U6 small nuclear 999, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:245215377-245215878 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:245248413-245249612 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:245262289-245262798 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:245262799-245263308 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:245270238-245270738 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:245270739-245271239 Neighboring gene uncharacterized LOC124904572

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000001.11 Chromosome 1 Reference GRCh38.p14 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    245022253..245032619
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007066990.1 RNA Sequence

  2. XR_001737765.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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