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TRK-CTT7-1 tRNA-Lys (anticodon CTT) 7-1 [ Homo sapiens (human) ]

Gene ID: 107985760, updated on 10-Oct-2023

Summary

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Official Symbol
TRK-CTT7-1provided by HGNC
Official Full Name
tRNA-Lys (anticodon CTT) 7-1provided by HGNC
Primary source
HGNC:HGNC:35098
See related
AllianceGenome:HGNC:35098
Gene type
tRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TRNAL48; TRNAQ49P; TRNAK-CUU
Summary
This record represents a tRNA model predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).
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Genomic context

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Location:
1p32.3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (54957869..54957941, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (54838085..54838157, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:55316729-55317230 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:55317231-55317730 Neighboring gene 24-dehydrocholesterol reductase Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:55348920-55349489 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:55352395-55352896 Neighboring gene DHCR24 divergent transcript Neighboring gene uncharacterized LOC124904184 Neighboring gene NANOG hESC enhancer GRCh37_chr1:55368845-55369402 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:55371954-55372516 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr1:55372517-55373077 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1068 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 927 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1069 Neighboring gene uncharacterized LOC105378736 Neighboring gene transmembrane protein 61

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Chan PP, et al. Nucleic Acids Res, 2009 Jan. PMID 18984615, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

General gene information

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Other Names

  • tRNA-Lys-CTT-7-1
  • transfer RNA glutamine 49 (anticodon CUG) pseudogene
  • transfer RNA lysine (anticodon CUU)
  • transfer RNA-Lys (CTT) 7-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    54957869..54957941 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    54838085..54838157 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
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