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FSIP2-AS1 FSIP2 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 107985781, updated on 10-Oct-2023

Summary

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Official Symbol
FSIP2-AS1provided by HGNC
Official Full Name
FSIP2 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40978
See related
Ensembl:ENSG00000231646 AllianceGenome:HGNC:40978
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 2.0), stomach (RPKM 1.0) and 12 other tissues See more
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Genomic context

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Location:
2q32.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (185783691..185800151, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (186272766..186289230, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (186648418..186664878, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene U8 small nucleolar RNA Neighboring gene FSIP2 antisense RNA 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12166 Neighboring gene fibrous sheath interacting protein 2 Neighboring gene fibrous sheath interacting protein 2 pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:186711714-186712223 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:186729029-186729738 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:186729739-186730447 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:186739935-186740880 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:186740881-186741824 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:186781480-186781581 Neighboring gene MPRA-validated peak3973 silencer Neighboring gene ribosomal protein L21 pseudogene 32

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. Harrington JJ, et al. Nat Biotechnol, 2001 May. PMID 11329013

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_144453.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC008174, BG206007
    Related
    ENST00000436557.5

  2. NR_144454.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate 3' terminal exon and is shorter compared to variant 1.
    Source sequence(s)
    AC008174, BG185794
    Related
    ENST00000429929.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    185783691..185800151 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    186272766..186289230 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases