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KMT2CP5 lysine methyltransferase 2C pseudogene 5 [ Homo sapiens (human) ]

Gene ID: 107985798, updated on 28-Oct-2024

Summary

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Official Symbol
KMT2CP5provided by HGNC
Official Full Name
lysine methyltransferase 2C pseudogene 5provided by HGNC
Primary source
HGNC:HGNC:56183
See related
AllianceGenome:HGNC:56183
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See KMT2CP5 in Genome Data Viewer
Location:
2p11.2
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (91686102..91712110, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (91875829..91901845, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (91874128..91900136, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene LSP1 pseudogene 4 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:91846385-91847216 Neighboring gene RNA, 5S ribosomal pseudogene 100 Neighboring gene dopamine receptor D5 pseudogene 1 Neighboring gene NKAIN1 pseudogene 2 Neighboring gene NANOG hESC enhancer GRCh37_chr2:91921621-91922171 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:91926707-91927208 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:91932671-91933268 Neighboring gene IGSF3 pseudogene 2 Neighboring gene KMT5A pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_171627.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC027612

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    91686102..91712110 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    91875829..91901845 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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