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LOC107985900 uncharacterized LOC107985900 [ Homo sapiens (human) ]

Gene ID: 107985900, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107985900
Gene description
uncharacterized LOC107985900
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107985900 in Genome Data Viewer
Location:
2p12
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (75223482..75308701, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124907850 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11678 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11679 Neighboring gene tachykinin receptor 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:75319672-75319876 Neighboring gene microRNA 5000 Neighboring gene uncharacterized LOC105374811 Neighboring gene NANOG hESC enhancer GRCh37_chr2:75440885-75441885 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:75444277-75444776 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:75444809-75444984 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:75446173-75446920 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16084 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16085 Neighboring gene uncharacterized LOC105374810 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:75608329-75608829 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16086 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16087 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16088 Neighboring gene small nucleolar RNA U13

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000002.12 Chromosome 2 Reference GRCh38.p14 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    75223482..75308701 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001739546.2 RNA Sequence

  2. XR_001739545.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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