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LOC107985909 uncharacterized LOC107985909 [ Homo sapiens (human) ]

Gene ID: 107985909, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107985909
Gene description
uncharacterized LOC107985909
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107985909 in Genome Data Viewer
Location:
2p11.2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (87530236..87550888, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (87542272..87562936, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1943 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:87756227-87756812 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:87762086-87762942 Neighboring gene uncharacterized LOC124906032 Neighboring gene cytoskeleton regulator RNA Neighboring gene NK cell activity associated lncRNA 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:87826545-87827046 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:87871520-87872281 Neighboring gene platelet activating factor acetylhydrolase 1b regulatory subunit 1 pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:87882987-87883648 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:87929009-87929740 Neighboring gene microRNA 4435-1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    87530236..87550888 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001739579.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    87542272..87562936 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007072263.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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