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LINC02034 long intergenic non-protein coding RNA 2034 [ Homo sapiens (human) ]

Gene ID: 107986125, updated on 17-Sep-2024

Summary

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Official Symbol
LINC02034provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2034provided by HGNC
Primary source
HGNC:HGNC:52868
See related
AllianceGenome:HGNC:52868
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02034 in Genome Data Viewer
Location:
3q21.3
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (127537203..127556877)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (130271861..130291526)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:127007005-127007506 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20455 Neighboring gene proline rich 20G Neighboring gene long intergenic non-protein coding RNA 2016 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:127056419-127057078 Neighboring gene uncharacterized LOC105374094 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:127110535-127111346 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:127113684-127114550 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr3:127121540-127122739 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20456 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr3:127171391-127171911 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14686 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:127184965-127185464 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:127184463-127184964 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:127191951-127192452 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:127192453-127192952 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:127212327-127213012 Neighboring gene long intergenic non-protein coding RNA 1471 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14687 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:127293720-127294299 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:127294300-127294878 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:127298480-127299441 Neighboring gene microRNA 6825 Neighboring gene transmembrane protein adipocyte associated 1 Neighboring gene microRNA 7976

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    127537203..127556877
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007096065.1 RNA Sequence

  2. XR_007096066.1 RNA Sequence

  3. XR_007096067.1 RNA Sequence

  4. XR_007096068.1 RNA Sequence

  5. XR_001740885.2 RNA Sequence

  6. XR_007096069.1 RNA Sequence

  7. XR_001740890.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    130271861..130291526
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007073803.1 RNA Sequence

  2. XR_007073805.1 RNA Sequence

  3. XR_007073806.1 RNA Sequence

  4. XR_007073807.1 RNA Sequence

  5. XR_007073802.1 RNA Sequence

  6. XR_007073808.1 RNA Sequence

  7. XR_007073804.1 RNA Sequence

Nucleotide Protein
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