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LOC107986138 uncharacterized LOC107986138 [ Homo sapiens (human) ]

Gene ID: 107986138, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107986138
Gene description
uncharacterized LOC107986138
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107986138 in Genome Data Viewer
Location:
3q24
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (145939841..145964125)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (148695170..148719456)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:145427323-145428144 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:145436788-145437383 Neighboring gene GM2A pseudogene 1 Neighboring gene NANOG hESC enhancer GRCh37_chr3:145533387-145533922 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_65040 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_65044 Neighboring gene ribosomal protein L21 pseudogene 39 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:145621747-145622521 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:145645870-145646452 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:145815129-145815678 Neighboring gene lncRNA sorafenib resistance in renal cell carcinoma associated Neighboring gene MPRA-validated peak4856 silencer Neighboring gene procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:145852057-145852829

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    145939841..145964125
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007096277.1 RNA Sequence

  2. XR_007096278.1 RNA Sequence

  3. XR_007096276.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    148695170..148719456
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007073230.1 RNA Sequence

  2. XR_007073231.1 RNA Sequence

  3. XR_007073229.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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