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LINC01218 long intergenic non-protein coding RNA 1218 [ Homo sapiens (human) ]

Gene ID: 107986233, updated on 17-Sep-2024

Summary

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Official Symbol
LINC01218provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1218provided by HGNC
Primary source
HGNC:HGNC:41420
See related
AllianceGenome:HGNC:41420
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
EMCN-IT1
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC01218 in Genome Data Viewer
Location:
4q24
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (100811419..100880122, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (104126686..104195404, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (101732576..101801279, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1216 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21745 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:101731907-101732751 Neighboring gene long intergenic non-protein coding RNA 1217 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21746 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_71492 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_71505 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:101887592-101888092 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr4:101907345-101907846 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15589 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21747 Neighboring gene Sharpr-MPRA regulatory region 8198 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:101961837-101962456 Neighboring gene protein phosphatase 3 catalytic subunit alpha Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:102035867-102036688 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15590 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21748 Neighboring gene NANOG hESC enhancer GRCh37_chr4:102076410-102076911 Neighboring gene Sharpr-MPRA regulatory region 422 Neighboring gene Sharpr-MPRA regulatory region 14793 Neighboring gene microRNA 8066 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:102225920-102226503 Neighboring gene microRNA 1255a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

General gene information

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Other Names

  • EMCN intronic transcript 1 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_189167.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC034150, AP001964

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    100811419..100880122 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    104126686..104195404 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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