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LOC107986277 uncharacterized LOC107986277 [ Homo sapiens (human) ]

Gene ID: 107986277, updated on 17-Jun-2024

Summary

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Gene symbol
LOC107986277
Gene description
uncharacterized LOC107986277
See related
Ensembl:ENSG00000282904
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 3.4) See more
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Genomic context

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See LOC107986277 in Genome Data Viewer
Location:
4p12
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (47463883..47470479)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (47431094..47437785)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene gamma-aminobutyric acid type A receptor subunit beta1 Neighboring gene small nucleolar RNA U13 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:47379937-47380444 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15398 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:47416165-47416745 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:47432124-47432333 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15399 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21530 Neighboring gene Sharpr-MPRA regulatory region 5912 Neighboring gene COMM domain containing 8 Neighboring gene ribosomal protein L21 pseudogene 52 Neighboring gene ATPase phospholipid transporting 10D (putative) Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15400 Neighboring gene uncharacterized LOC105374444 Neighboring gene corin, serine peptidase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    47463883..47470479
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001741680.3 RNA Sequence

  2. XR_001741682.3 RNA Sequence

    Related
    ENST00000635489.1

  3. XR_001741681.3 RNA Sequence

  4. XR_001741679.2 RNA Sequence

  5. XR_001741683.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    47431094..47437785
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007074232.1 RNA Sequence

  2. XR_007074233.1 RNA Sequence

  3. XR_007074231.1 RNA Sequence

  4. XR_007074230.1 RNA Sequence

  5. XR_007074229.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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