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LOC107986337 uncharacterized LOC107986337 [ Homo sapiens (human) ]

Gene ID: 107986337, updated on 22-Oct-2024

Summary

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Gene symbol
LOC107986337
Gene description
uncharacterized LOC107986337
See related
Ensembl:ENSG00000247130
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107986337 in Genome Data Viewer
Location:
4q35.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (188119359..188127562, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (191467060..191475253, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:188916113-188917092 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:188917093-188918074 Neighboring gene ZFP42 zinc finger protein Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:188942947-188943484 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:188953065-188953586 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:188953587-188954108 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:188962925-188963778 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:189002377-189002958 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:189021213-189021714 Neighboring gene tripartite motif family like 2 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:189027714-189028231 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:189028751-189029269 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:189029270-189029788 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:189033421-189033938 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:189033939-189034456 Neighboring gene FAU pseudogene 3 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr4:189047967-189049166 Neighboring gene RNA, U6 small nuclear 173, pseudogene Neighboring gene tripartite motif family like 1 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:189080404-189081603 Neighboring gene long intergenic non-protein coding RNA 2434

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    188119359..188127562 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001741958.2 RNA Sequence

    Related
    ENST00000759345.1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    191467060..191475253 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007075275.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases