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LOC107986596 uncharacterized LOC107986596 [ Homo sapiens (human) ]

Gene ID: 107986596, updated on 10-Oct-2023

Summary

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Gene symbol
LOC107986596
Gene description
uncharacterized LOC107986596
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
6p21.1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (42452360..42457184)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (42280631..42285455)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (42420098..42424922)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene transcriptional regulating factor 1 Neighboring gene uncharacterized LOC124901316 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr6:42225117-42225844 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:42227922-42228442 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:42228443-42228963 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:42236725-42237554 Neighboring gene NANOG hESC enhancer GRCh37_chr6:42237822-42238387 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:42247165-42247677 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:42283002-42283669 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24548 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24549 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24550 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17202 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24551 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24552 Neighboring gene uncharacterized LOC124901512 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24553 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24554 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:42408971-42409689 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:42409690-42410407 Neighboring gene arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2-like Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17203 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17204 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24555 Neighboring gene small nucleolar RNA U13 Neighboring gene ribosomal protein L36a pseudogene 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_171668.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL450325

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    42452360..42457184
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    42280631..42285455
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases