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LOC107986920 uncharacterized LOC107986920 [ Homo sapiens (human) ]

Gene ID: 107986920, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107986920
Gene description
uncharacterized LOC107986920
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107986920 in Genome Data Viewer
Location:
8p21.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (19761003..19778968, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (20025735..20043979, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene chondroitin sulfate N-acetylgalactosaminyltransferase 1 Neighboring gene uncharacterized LOC124901900 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:19522068-19523267 Neighboring gene uncharacterized LOC124901899 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:19536806-19537406 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27058 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:19589033-19590232 Neighboring gene MPRA-validated peak6932 silencer Neighboring gene MPRA-validated peak6933 silencer Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:19670041-19670619 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18969 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27059 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27060 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18970 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27061 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27062 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27063 Neighboring gene uncharacterized LOC124901901 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:19713825-19714324 Neighboring gene integrator complex subunit 10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    19761003..19778968 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001745821.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    20025735..20043979 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007078774.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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