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LOC107986941 uncharacterized LOC107986941 [ Homo sapiens (human) ]

Gene ID: 107986941, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107986941
Gene description
uncharacterized LOC107986941
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107986941 in Genome Data Viewer
Location:
8q11.21
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (48101247..48111219)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (48478050..48488021)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene RNA, U6 small nuclear 519, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:48909281-48909780 Neighboring gene UBE2V2 antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19180 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19181 Neighboring gene ubiquitin conjugating enzyme E2 V2 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:48947276-48947776 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:48947777-48948277 Neighboring gene MPRA-validated peak7010 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:49017963-49018613 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:49042982-49043566 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:49091401-49091902 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:49091903-49092402 Neighboring gene cell division cycle associated 8 pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:49111559-49112066 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:49112067-49112573 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr8:49166365-49167210 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:49173243-49173804 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:49173820-49174820 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:49183073-49183944 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:49186311-49186812 Neighboring gene IDI1 pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    48101247..48111219
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007060907.1 RNA Sequence

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_025791782.1 Reference GRCh38.p14 PATCHES

    Range
    35897..45842
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001745890.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    48478050..48488021
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007078968.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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