U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC107986997 uncharacterized LOC107986997 [ Homo sapiens (human) ]

Gene ID: 107986997, updated on 17-Sep-2024

Summary

Go to the top of the page Help
Gene symbol
LOC107986997
Gene description
uncharacterized LOC107986997
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC107986997 in Genome Data Viewer
Location:
9p11.2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (40945420..40991831, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene ankyrin repeat domain 30B pseudogene Neighboring gene RNA, U6 small nuclear 156, pseudogene Neighboring gene NANOG hESC enhancer GRCh37_chr9:66768055-66768556 Neighboring gene NANOG hESC enhancer GRCh37_chr9:66784324-66784825 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:66809156-66809719 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:66818900-66819484 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr9:66823139-66823953 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:66832750-66833586 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:66833587-66834422 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:66834423-66835258 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:66843600-66844341 Neighboring gene NANOG hESC enhancer GRCh37_chr9:66854522-66855023 Neighboring gene MPRA-validated peak7256 silencer Neighboring gene microRNA 1299 Neighboring gene NANOG hESC enhancer GRCh37_chr9:68695497-68695998 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:69048303-69048804 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:68712489-68713157 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr9:68725219-68725948 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19919 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28424 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28425 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28426 Neighboring gene FSHD region gene 1 family member H, pseudogene Neighboring gene phosphoglucomutase 5 pseudogene 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19920 Neighboring gene uncharacterized LOC124902161

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_000009.12 Chromosome 9 Reference GRCh38.p14 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    40945420..40991831 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001746463.3 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases