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LOC107987031 uncharacterized LOC107987031 [ Homo sapiens (human) ]

Gene ID: 107987031, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107987031
Gene description
uncharacterized LOC107987031
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107987031 in Genome Data Viewer
Location:
9q21.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (78093715..78097418, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (90250841..90254544, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene G protein subunit alpha 14 Neighboring gene RNA, U6 small nuclear 1303, pseudogene Neighboring gene Sharpr-MPRA regulatory region 6496 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28484 Neighboring gene G protein subunit alpha q Neighboring gene MPRA-validated peak7274 silencer Neighboring gene uncharacterized LOC107987081 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:80571382-80571920 Neighboring gene Sharpr-MPRA regulatory region 6688 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:80627247-80627399 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:80645916-80646810 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28485 Neighboring gene synaptogyrin 2 pseudogene 2 Neighboring gene RN7SK pseudogene 59

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    78093715..78097418 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001746571.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    90250841..90254544 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007080652.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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