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FAM239C family with sequence similarity 239 member C [ Homo sapiens (human) ]

Gene ID: 107987330, updated on 17-Sep-2024

Summary

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Official Symbol
FAM239Cprovided by HGNC
Official Full Name
family with sequence similarity 239 member Cprovided by HGNC
Primary source
HGNC:HGNC:53416
See related
Ensembl:ENSG00000285756 AllianceGenome:HGNC:53416
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in skin (RPKM 6.5), thyroid (RPKM 2.7) and 19 other tissues See more
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Genomic context

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See FAM239C in Genome Data Viewer
Location:
Xp22.33
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (3929372..3937872, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene tRNA-Ile (anticodon GAT) 1-2 Neighboring gene zinc finger protein 839 pseudogene Neighboring gene tRNA-Ile (anticodon GAT) 1-3 Neighboring gene zinc finger protein 839 pseudogene Neighboring gene RPL24 pseudogene 9 Neighboring gene NANOG hESC enhancer GRCh37_chrX:4139581-4140146 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:4174729-4175230 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:4175231-4175730 Neighboring gene ReSE screen-validated silencer GRCh37_chrX:4203631-4203806 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrX:4300102-4300943 Neighboring gene H3K27ac hESC enhancer GRCh37_chrX:4393267-4393845 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chrX:4463784-4464983 Neighboring gene uncharacterized LOC101928201

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000023.11 Chromosome X Reference GRCh38.p14 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

General gene information

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Other Names

  • family with sequence similarity 239 member C (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    3929372..3937872 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001755780.2 RNA Sequence

    Related
    ENST00000381105.2
Nucleotide Protein
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