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Hr39 nuclear hormone receptor FTZ-F1 beta [ Drosophila elegans ]

Gene ID: 108150711, updated on 15-May-2024

Summary

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Gene symbol
Hr39
Gene description
nuclear hormone receptor FTZ-F1 beta
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila elegans
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Orthologs
fruit fly all
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Genomic context

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See Hr39 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
102 current ASM1815250v1 (GCF_018152505.1) Unplaced Scaffold NW_024545782.1 (3173440..3200960)
101 previous assembly Dele_2.0 (GCF_000224195.1) Unplaced Scaffold NW_016083150.1 (6098..33379)

NW_024545782.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108135467 Neighboring gene alpha/beta-gliadin clone PW1215-like Neighboring gene ATP synthase mitochondrial F1 complex assembly factor 2 homolog l(2)k14505 Neighboring gene uncharacterized LOC108150702

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hormone-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear hormone receptor FTZ-F1 beta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila elegans Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1815250v1

Genomic

  1. NW_024545782.1 Reference ASM1815250v1

    Range
    3173440..3200960
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017278990.2 → XP_017134479.1  nuclear hormone receptor FTZ-F1 beta

    Conserved Domains (2) summary
    cd06930
    Location:652 → 814
    NR_LBD_F2; Ligand-binding domain of nuclear receptor family 2
    cd07167
    Location:400 → 487
    NR_DBD_Lrh-1_like; The DNA-binding domain of Lrh-1 like nuclear receptor family like is composed of two C4-type zinc fingers

  2. XM_041708767.1 → XP_041564701.1  nuclear hormone receptor FTZ-F1 beta

    Conserved Domains (2) summary
    cd06930
    Location:652 → 814
    NR_LBD_F2; Ligand-binding domain of nuclear receptor family 2
    cd07167
    Location:400 → 487
    NR_DBD_Lrh-1_like; The DNA-binding domain of Lrh-1 like nuclear receptor family like is composed of two C4-type zinc fingers

  3. XM_041708766.1 → XP_041564700.1  nuclear hormone receptor FTZ-F1 beta

    Conserved Domains (2) summary
    cd06930
    Location:652 → 814
    NR_LBD_F2; Ligand-binding domain of nuclear receptor family 2
    cd07167
    Location:400 → 487
    NR_DBD_Lrh-1_like; The DNA-binding domain of Lrh-1 like nuclear receptor family like is composed of two C4-type zinc fingers

  4. XM_017278988.2 → XP_017134477.1  nuclear hormone receptor FTZ-F1 beta

    Conserved Domains (2) summary
    cd06930
    Location:652 → 814
    NR_LBD_F2; Ligand-binding domain of nuclear receptor family 2
    cd07167
    Location:400 → 487
    NR_DBD_Lrh-1_like; The DNA-binding domain of Lrh-1 like nuclear receptor family like is composed of two C4-type zinc fingers

  5. XM_017278989.2 → XP_017134478.1  nuclear hormone receptor FTZ-F1 beta

    Conserved Domains (2) summary
    cd06930
    Location:652 → 814
    NR_LBD_F2; Ligand-binding domain of nuclear receptor family 2
    cd07167
    Location:400 → 487
    NR_DBD_Lrh-1_like; The DNA-binding domain of Lrh-1 like nuclear receptor family like is composed of two C4-type zinc fingers
Nucleotide Protein
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