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LOC108281166 RAD51B intron CAGE-defined mid-level expression enhancer [ Homo sapiens (human) ]

Gene ID: 108281166, updated on 10-Oct-2023

Summary

Gene symbol
LOC108281166
Gene description
RAD51B intron CAGE-defined mid-level expression enhancer
Gene type
biological region
Feature type(s)
misc_feature: CAGE_cluster
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic element is located in an intron of the RAD51B (RAD51 paralog B) gene. It was defined as a mid-level expression actively transcribed enhancer based on the presence of balanced bidirectional capped transcripts by cap analysis of gene expression (CAGE). It was validated as a functional enhancer by reporter assays in HeLa cells. [provided by RefSeq, Jul 2016]
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Genomic context

Location:
14q23-q24.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (68547477..68548068)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (62754355..62754946)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (69014194..69014785)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene RAD51 paralog B Neighboring gene Sharpr-MPRA regulatory region 3354 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:68937409-68937942 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:68937943-68938476 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr14:68942861-68944060 Neighboring gene peptidylprolyl isomerase A pseudogene 6 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:68972115-68972678 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:68972679-68973242 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:68973243-68973806 Neighboring gene VISTA enhancer hs1616 Neighboring gene uncharacterized LOC124903334 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:68993665-68994185 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:68993143-68993664 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:69006151-69006711 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:69017510-69018030 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:69018031-69018551 Neighboring gene uncharacterized LOC124903335 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:69035996-69036508 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_36356 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:69052085-69052586 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_36364 Neighboring gene uncharacterized LOC107984016 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:69073752-69074398 Neighboring gene Sharpr-MPRA regulatory region 11310

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_051126.1 

    Range
    101..692
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    68547477..68548068
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    62754355..62754946
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    GenBank, FASTA, Sequence Viewer (Graphics)