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Zfp568 zinc finger protein 568 [ Rattus norvegicus (Norway rat) ]

Gene ID: 108348102, updated on 2-Nov-2024

Summary

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Official Symbol
Zfp568provided by RGD
Official Full Name
zinc finger protein 568provided by RGD
Primary source
RGD:11363847
See related
EnsemblRapid:ENSRNOG00000046652 AllianceGenome:RGD:11363847
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1560682
Summary
Predicted to enable transcription cis-regulatory region binding activity and transcription corepressor binding activity. Predicted to be involved in in utero embryonic development and negative regulation of DNA-templated transcription. Predicted to act upstream of or within several processes, including convergent extension; embryonic placenta morphogenesis; and negative regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human all
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Genomic context

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See Zfp568 in Genome Data Viewer
Location:
1q21
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (94334011..94385166)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (85206643..85257759)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (88281402..88336445)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 74 Neighboring gene uncharacterized LOC103691076 Neighboring gene zinc finger protein 568 like, pseudogene 1 Neighboring gene ZFP14 zinc finger protein Neighboring gene uncharacterized LOC134483093

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene and alternative splicing annotation with AIR. Florea L, et al. Genome Res, 2005 Jan. PMID 15632090, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables transcription cis-regulatory region binding ISO
Inferred from Sequence Orthology
more info
  
enables transcription corepressor binding ISO
Inferred from Sequence Orthology
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within convergent extension involved in axis elongation ISO
Inferred from Sequence Orthology
more info
  
acts_upstream_of_or_within convergent extension involved in neural plate elongation ISO
Inferred from Sequence Orthology
more info
  
acts_upstream_of_or_within embryonic placenta morphogenesis ISO
Inferred from Sequence Orthology
more info
  
involved_in embryonic placenta morphogenesis ISO
Inferred from Sequence Orthology
more info
  
involved_in in utero embryonic development ISO
Inferred from Sequence Orthology
more info
  
involved_in negative regulation of DNA-templated transcription ISO
Inferred from Sequence Orthology
more info
  
acts_upstream_of_or_within negative regulation of transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
  
involved_in negative regulation of transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
  
acts_upstream_of_or_within regulation of cell communication ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
located_in nucleus ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
zinc finger protein 568
Names
zinc finger protein 30 homolog
zinc finger protein 420-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001419981.1 → NP_001406910.1  zinc finger protein 568

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001
    Related
    ENSRNOP00000066106.4, ENSRNOT00000072762.5

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    94334011..94385166
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039093718.2 → XP_038949646.1  zinc finger protein 568 isoform X1

    Conserved Domains (3) summary
    smart00349
    Location:48 → 108
    KRAB; krueppel associated box
    COG5048
    Location:367 → 687
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:606 → 626
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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