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Dmrtc1a DMRT-like family C1a [ Rattus norvegicus (Norway rat) ]

Gene ID: 108348153, updated on 2-Nov-2024

Summary

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Official Symbol
Dmrtc1aprovided by RGD
Official Full Name
DMRT-like family C1aprovided by RGD
Primary source
RGD:11451771
See related
EnsemblRapid:ENSRNOG00000048295 AllianceGenome:RGD:11451771
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Dmrtc1
Summary
Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Orthologous to several human genes including DMRTC1 (DMRT like family C1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See Dmrtc1a in Genome Data Viewer
Location:
Xq22
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (71861910..71892508)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (67822187..67852572)
106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (72624660..72654258)

Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene phosphorylase kinase regulatory subunit alpha 1 Neighboring gene ribosomal protein S27a, pseudogene 3 Neighboring gene NSA2 ribosome biogenesis factor, pseudogene 16 Neighboring gene doublesex- and mab-3-related transcription factor C1-like Neighboring gene spindlin 1, pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene and alternative splicing annotation with AIR. Florea L, et al. Genome Res, 2005 Jan. PMID 15632090, Free PMC Article
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC114388

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
doublesex- and mab-3-related transcription factor C1
Names
DMRT like family C1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001025288.1 → NP_001020459.1  doublesex- and mab-3-related transcription factor C1

    See identical proteins and their annotated locations for NP_001020459.1

    Status: PROVISIONAL

    Source sequence(s)
    BC097356
    UniProtKB/Swiss-Prot
    Q4QR87
    UniProtKB/TrEMBL
    A0A8I6AUD9
    Related
    ENSRNOP00000069916.1, ENSRNOT00000089965.3
    Conserved Domains (1) summary
    pfam15791
    Location:113 → 223
    DMRT-like; Doublesex-and mab-3-related transcription factor C1 and C2

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086039.1 Reference GRCr8

    Range
    71861910..71892508
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063279727.1 → XP_063135797.1  doublesex- and mab-3-related transcription factor C1 isoform X3

  2. XM_039099390.2 → XP_038955318.1  doublesex- and mab-3-related transcription factor C1 isoform X2

    UniProtKB/TrEMBL
    A0A8I6A6M7, A0A8I6AUD9
    Related
    ENSRNOP00000087084.1, ENSRNOT00000117626.2
    Conserved Domains (1) summary
    pfam15791
    Location:146 → 258
    DMRT-like; Doublesex-and mab-3-related transcription factor C1 and C2

  3. XM_039099389.2 → XP_038955317.1  doublesex- and mab-3-related transcription factor C1 isoform X1

    Conserved Domains (1) summary
    pfam15791
    Location:176 → 288
    DMRT-like; Doublesex-and mab-3-related transcription factor C1 and C2
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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