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RAG1 recombination activating 1 [ Lepidothrix coronata (blue-crowned manakin) ]

Gene ID: 108496338, updated on 3-Aug-2024

Summary

Gene symbol
RAG1
Gene description
recombination activating 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Lepidothrix coronata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Pipridae; Lepidothrix
Also known as
RAG-1
Orthologs
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Genomic context

See RAG1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current Lepidothrix_coronata-1.0 (GCF_001604755.1) Unplaced Scaffold NW_016690181.1 (8333894..8338093, complement)

NW_016690181.1Genomic Context describing neighboring genes Neighboring gene intraflagellar transport associated protein Neighboring gene recombination activating 2 Neighboring gene TNF receptor associated factor 6 Neighboring gene proline rich 5 like

Genomic regions, transcripts, and products

Genomic Sequence:
NW_016690181.1 Unplaced Scaffold Reference Lepidothrix_coronata-1.0

General gene information

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables double-stranded DNA endonuclease activity IEA
Inferred from Electronic Annotation
more info
PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in V(D)J recombination IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in adaptive immune response IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in pre-B cell allelic exclusion IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
part_of DNA recombinase complex IEA
Inferred from Electronic Annotation
more info
PubMed 
part_of endodeoxyribonuclease complex IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
V(D)J recombination-activating protein 1
Names
recombination activating protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lepidothrix coronata Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Lepidothrix_coronata-1.0

Genomic

  1. NW_016690181.1 Reference Lepidothrix_coronata-1.0

    Range
    8333894..8338093 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017812978.1XP_017668467.1  V(D)J recombination-activating protein 1

    UniProtKB/TrEMBL
    A0A6J0H2F7, Q8QG03