U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC109488315 RNA-binding motif, single-stranded-interacting protein 1-like [ Branchiostoma belcheri (Belcher's lancelet) ]

Gene ID: 109488315, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC109488315
Gene description
RNA-binding motif, single-stranded-interacting protein 1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Branchiostoma belcheri
Lineage
Eukaryota; Metazoa; Chordata; Cephalochordata; Leptocardii; Amphioxiformes; Branchiostomatidae; Branchiostoma
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC109488315 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
100 current Haploidv18h27 (GCF_001625305.1) Unplaced Scaffold NW_017804609.1 (646694..680113)

NW_017804609.1Genomic Context describing neighboring genes Neighboring gene enkurin-like Neighboring gene uncharacterized LOC109488287 Neighboring gene leucine-rich repeats and immunoglobulin-like domains protein 1 Neighboring gene telomere repeats-binding bouquet formation protein 1-like Neighboring gene protein white-like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_017804609.1 Unplaced Scaffold Reference Haploidv18h27 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA 3'-UTR binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables poly(A) binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables poly(U) RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
RNA-binding motif, single-stranded-interacting protein 1-like; RNA-binding motif, single-stranded-interacting protein 3-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Branchiostoma belcheri Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Haploidv18h27 Primary Assembly

Genomic

  1. NW_017804609.1 Reference Haploidv18h27 Primary Assembly

    Range
    646694..680113
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019792511.1 → XP_019648070.1  RNA-binding motif, single-stranded-interacting protein 3-like isoform X5

    UniProtKB/TrEMBL
    A0A6P5A4A4

  2. XM_019792509.1 → XP_019648068.1  RNA-binding motif, single-stranded-interacting protein 3-like isoform X3

    UniProtKB/TrEMBL
    A0A6P5AE96

  3. XM_019792508.1 → XP_019648067.1  RNA-binding motif, single-stranded-interacting protein 3-like isoform X2

    UniProtKB/TrEMBL
    A0A6P5AYF6

  4. XM_019792507.1 → XP_019648066.1  RNA-binding motif, single-stranded-interacting protein 3-like isoform X1

    UniProtKB/TrEMBL
    A0A6P5B0K8

  5. XM_019792510.1 → XP_019648069.1  RNA-binding motif, single-stranded-interacting protein 1-like isoform X4

    UniProtKB/TrEMBL
    A0A6P5APL5
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases