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SGMS1 sphingomyelin synthase 1 [ Bos indicus (zebu cattle) ]

Gene ID: 109579164, updated on 14-Mar-2024

Summary

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Gene symbol
SGMS1
Gene description
sphingomyelin synthase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos indicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See SGMS1 in Genome Data Viewer
Location:
chromosome: 26
Exon count:
24
Annotation release Status Assembly Chr Location
100 current Bos_indicus_1.0 (GCF_000247795.1) 26 NC_032675.1 (9233013..9558083, complement)

Chromosome 26 - NC_032675.1Genomic Context describing neighboring genes Neighboring gene phosphatidylcholine:ceramide cholinephosphotransferase 1-like Neighboring gene N-acylsphingosine amidohydrolase 2 Neighboring gene rab GTPase-activating protein 1-like Neighboring gene multiple inositol-polyphosphate phosphatase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_032675.1 Chromosome 26 Reference Bos_indicus_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ceramide cholinephosphotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sphingomyelin synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingomyelin biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphatidylcholine:ceramide cholinephosphotransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bos indicus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bos_indicus_1.0 Primary Assembly

Genomic

  1. NC_032675.1 Reference Bos_indicus_1.0 Primary Assembly

    Range
    9233013..9558083 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019988720.1 → XP_019844279.1  phosphatidylcholine:ceramide cholinephosphotransferase 1 isoform X2

    UniProtKB/TrEMBL
    A0A6P5E1Q7
    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    pfam14360
    Location:276 → 349
    PAP2_C; PAP2 superfamily C-terminal

  2. XM_019988702.1 → XP_019844261.1  phosphatidylcholine:ceramide cholinephosphotransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P5E147
    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    cl00474
    Location:276 → 302
    PAP2_like; PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid ...

  3. XM_019988707.1 → XP_019844266.1  phosphatidylcholine:ceramide cholinephosphotransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P5E147
    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    cl00474
    Location:276 → 302
    PAP2_like; PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid ...

  4. XM_019988698.1 → XP_019844257.1  phosphatidylcholine:ceramide cholinephosphotransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P5E147
    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    cl00474
    Location:276 → 302
    PAP2_like; PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid ...

  5. XM_019988697.1 → XP_019844256.1  phosphatidylcholine:ceramide cholinephosphotransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P5E147
    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    cl00474
    Location:276 → 302
    PAP2_like; PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid ...

  6. XM_019988699.1 → XP_019844258.1  phosphatidylcholine:ceramide cholinephosphotransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P5E147
    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    cl00474
    Location:276 → 302
    PAP2_like; PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid ...

  7. XM_019988706.1 → XP_019844265.1  phosphatidylcholine:ceramide cholinephosphotransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P5E147
    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    cl00474
    Location:276 → 302
    PAP2_like; PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid ...

  8. XM_019988709.1 → XP_019844268.1  phosphatidylcholine:ceramide cholinephosphotransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P5E147
    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    cl00474
    Location:276 → 302
    PAP2_like; PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid ...

  9. XM_019988708.1 → XP_019844267.1  phosphatidylcholine:ceramide cholinephosphotransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P5E147
    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    cl00474
    Location:276 → 302
    PAP2_like; PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid ...

  10. XM_019988696.1 → XP_019844255.1  phosphatidylcholine:ceramide cholinephosphotransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P5E147
    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    cl00474
    Location:276 → 302
    PAP2_like; PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid ...

  11. XM_019988700.1 → XP_019844259.1  phosphatidylcholine:ceramide cholinephosphotransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P5E147
    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    cl00474
    Location:276 → 302
    PAP2_like; PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid ...

  12. XM_019988701.1 → XP_019844260.1  phosphatidylcholine:ceramide cholinephosphotransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P5E147
    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    cl00474
    Location:276 → 302
    PAP2_like; PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid ...

  13. XM_019988704.1 → XP_019844263.1  phosphatidylcholine:ceramide cholinephosphotransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P5E147
    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    cl00474
    Location:276 → 302
    PAP2_like; PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid ...

  14. XM_019988705.1 → XP_019844264.1  phosphatidylcholine:ceramide cholinephosphotransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P5E147
    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    cl00474
    Location:276 → 302
    PAP2_like; PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid ...

  15. XM_019988713.1 → XP_019844272.1  phosphatidylcholine:ceramide cholinephosphotransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P5E147
    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    cl00474
    Location:276 → 302
    PAP2_like; PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid ...

  16. XM_019988711.1 → XP_019844270.1  phosphatidylcholine:ceramide cholinephosphotransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P5E147
    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    cl00474
    Location:276 → 302
    PAP2_like; PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid ...

  17. XM_019988712.1 → XP_019844271.1  phosphatidylcholine:ceramide cholinephosphotransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P5E147
    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    cl00474
    Location:276 → 302
    PAP2_like; PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid ...

  18. XM_019988710.1 → XP_019844269.1  phosphatidylcholine:ceramide cholinephosphotransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P5E147
    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    cl00474
    Location:276 → 302
    PAP2_like; PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid ...

  19. XM_019988717.1 → XP_019844276.1  phosphatidylcholine:ceramide cholinephosphotransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P5E147
    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    cl00474
    Location:276 → 302
    PAP2_like; PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid ...

  20. XM_019988718.1 → XP_019844277.1  phosphatidylcholine:ceramide cholinephosphotransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P5E147
    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    cl00474
    Location:276 → 302
    PAP2_like; PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid ...

  21. XM_019988716.1 → XP_019844275.1  phosphatidylcholine:ceramide cholinephosphotransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P5E147
    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    cl00474
    Location:276 → 302
    PAP2_like; PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid ...

  22. XM_019988715.1 → XP_019844274.1  phosphatidylcholine:ceramide cholinephosphotransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P5E147
    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    cl00474
    Location:276 → 302
    PAP2_like; PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid ...

  23. XM_019988719.1 → XP_019844278.1  phosphatidylcholine:ceramide cholinephosphotransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P5E147
    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    cl00474
    Location:276 → 302
    PAP2_like; PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid ...
Nucleotide Protein
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