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PDZD8 PDZ domain containing 8 [ Bos indicus (zebu cattle) ]

Gene ID: 109579166, updated on 11-Apr-2024

Summary

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Gene symbol
PDZD8
Gene description
PDZ domain containing 8
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos indicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See PDZD8 in Genome Data Viewer
Location:
chromosome: 26
Exon count:
5
Annotation release Status Assembly Chr Location
100 current Bos_indicus_1.0 (GCF_000247795.1) 26 NC_032675.1 (38112785..38193255, complement)

Chromosome 26 - NC_032675.1Genomic Context describing neighboring genes Neighboring gene potassium two pore domain channel subfamily K member 18 Neighboring gene solute carrier family 18 member A2 Neighboring gene uncharacterized LOC109579168 Neighboring gene uncharacterized LOC109553113 Neighboring gene empty spiracles homeobox 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_032675.1 Chromosome 26 Reference Bos_indicus_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial calcium ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitochondrion-endoplasmic reticulum membrane tethering IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondria-associated endoplasmic reticulum membrane contact site IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PDZ domain-containing protein 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bos indicus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bos_indicus_1.0 Primary Assembly

Genomic

  1. NC_032675.1 Reference Bos_indicus_1.0 Primary Assembly

    Range
    38112785..38193255 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019988721.1 → XP_019844280.1  PDZ domain-containing protein 8

    UniProtKB/TrEMBL
    A0A6P5E4C3
    Conserved Domains (4) summary
    PHA01929
    Location:554 → 640
    PHA01929; putative scaffolding protein
    cd00029
    Location:841 → 883
    C1; Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second ...
    cd00992
    Location:365 → 442
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cl26464
    Location:503 → 683
    Atrophin-1; Atrophin-1 family
Nucleotide Protein
Heading Accession and Version

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