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SNORD3J small nucleolar RNA, C/D box 3J [ Homo sapiens (human) ]

Gene ID: 109616985, updated on 10-Oct-2023

Summary

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Official Symbol
SNORD3Jprovided by HGNC
Official Full Name
small nucleolar RNA, C/D box 3Jprovided by HGNC
Primary source
HGNC:HGNC:52243
See related
Ensembl:ENSG00000221400 AllianceGenome:HGNC:52243
Gene type
snoRNA
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Predicted to act upstream of or within response to bacterium. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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See SNORD3J in Genome Data Viewer
Location:
10q11.21
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (43417250..43417440, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (44296248..44296438, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (43912698..43912888, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2326 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3290 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3291 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3292 Neighboring gene FXYD domain containing ion transport regulator 4 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:43882175-43882676 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:43882677-43883176 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:43890785-43891672 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3293 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2327 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:43893449-43894334 Neighboring gene heterogeneous nuclear ribonucleoprotein F Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3294 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:43897064-43897583 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2328 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3295 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:43903361-43903964 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2329 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3298 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2330 Neighboring gene Sharpr-MPRA regulatory region 12153 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2331 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:43916126-43916862 Neighboring gene long intergenic non-protein coding RNA 2916 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3300 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2332 Neighboring gene zinc finger protein 487 Neighboring gene H3K27ac-H3K4me1 hESC enhancers GRCh37_chr10:43950240-43951128 and GRCh37_chr10:43951129-43952017 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr10:43953391-43953946 Neighboring gene RNA, U7 small nuclear 193 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. An updated human snoRNAome. Jorjani H, et al. Nucleic Acids Res, 2016 Jun 20. PMID 27174936, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

General gene information

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Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_145740.1 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    AL450326
    Related
    ENST00000408473.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    43417250..43417440 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    44296248..44296438 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases