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SNORD165 small nucleolar RNA, C/D box 165 [ Homo sapiens (human) ]

Gene ID: 109623455, updated on 10-Oct-2023

Summary

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Official Symbol
SNORD165provided by HGNC
Official Full Name
small nucleolar RNA, C/D box 165provided by HGNC
Primary source
HGNC:HGNC:51879
See related
AllianceGenome:HGNC:51879
Gene type
snoRNA
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
7p22.1
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (4837388..4837450, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (4954590..4954652, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (4877019..4877081, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene forkhead box K1 Neighboring gene uncharacterized LOC124901581 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:4763724-4764310 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25560 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:4776642-4777196 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr7:4777977-4779176 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:4779416-4779969 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:4779970-4780524 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25561 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17900 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17901 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:4789475-4789974 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:4793383-4793937 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr7:4800052-4801251 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:4813996-4814672 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:4814673-4815349 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25565 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25566 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25567 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17903 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:4832559-4833233 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25568 Neighboring gene adaptor related protein complex 5 subunit zeta 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17904 Neighboring gene microRNA 4656 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:4847903-4848404 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:4848405-4848904 Neighboring gene Rap associating with DIL domain Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:4878225-4878893 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:4900904-4901516 Neighboring gene poly(A) polymerase beta Neighboring gene ribosomal protein L22 pseudogene 16

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. An updated human snoRNAome. Jorjani H, et al. Nucleic Acids Res, 2016 Jun 20. PMID 27174936, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_145804.1 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    AC092610

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    4837388..4837450 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    4954590..4954652 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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